NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0187861_10100796

Scaffold Ga0187861_10100796


Overview

Basic Information
Taxon OID3300018020 Open in IMG/M
Scaffold IDGa0187861_10100796 Open in IMG/M
Source Dataset NamePeatland microbial communities from SPRUCE experiment site at the Marcell Experimental Forest, Minnesota, USA - June2016WEW_10_100
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1393
Total Scaffold Genes3 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families2

Taxonomy
All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium SCN 57-15(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Wetlands → Bog → Peatland → Peatland Microbial Communities From Minnesota, Usa, Analyzing Carbon Cycling And Trace Gas Fluxes

Source Dataset Sampling Location
Location NameUSA: Minnesota
CoordinatesLat. (o)47.5028Long. (o)-93.4828Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F055381Metagenome138N
F058854Metagenome134N

Sequences

Protein IDFamilyRBSSequence
Ga0187861_101007962F055381N/AMKLFLKLLFILPALAAAGSSLRDVYLPPWCDREAFQIFELEINDLPVNCVQLDHPCTLFCTNQVLVVSNGIARARLLIDLKKTPATFPIIVMAPDANGRMTPRQRLICHLSLVPLPIQVEVRGGTFTVTNLTEEPFELEHAEAVNITSQDDRHIAGTLNGSGRLKLKGRAEIRLNRKPGPGGPG
Ga0187861_101007963F058854N/AEIIDRLNARWQGCAWQANRLELSGLTYQGALFPLITQGPGAFSLPSGAFVLRFHVLPLNARDNELILVLWGRIADPRDKPLARLFLRKGRLVWVCPIDTKADSLFDAPKEVELETRELIPGLWATVDVFINPLPYQQTFGWNLEMNHPQDPAKPSGKPLHLARQLTSADWTLQKIEMPRLHAAWLGQMELLPADTPPAQLRPNILRQ
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