NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0187881_10064530

Scaffold Ga0187881_10064530


Overview

Basic Information
Taxon OID3300018024 Open in IMG/M
Scaffold IDGa0187881_10064530 Open in IMG/M
Source Dataset NamePeatland microbial communities from SPRUCE experiment site at the Marcell Experimental Forest, Minnesota, USA - June2016WEW_19_100
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1730
Total Scaffold Genes5 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)4 (80.00%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (66.67%)
Associated Families3

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Wetlands → Bog → Peatland → Peatland Microbial Communities From Minnesota, Usa, Analyzing Carbon Cycling And Trace Gas Fluxes

Source Dataset Sampling Location
Location NameUSA: Minnesota
CoordinatesLat. (o)47.5028Long. (o)-93.4828Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F016632Metagenome / Metatranscriptome245Y
F027079Metagenome / Metatranscriptome195Y
F028392Metagenome191Y

Sequences

Protein IDFamilyRBSSequence
Ga0187881_100645302F027079AGGAGVIKSFVNLCLILFLDMLAYMVAIVAAAAVAWATVCGARWVCAAFRNSVLALPARQRKKEMCAHATR
Ga0187881_100645303F016632AGGAGGLTGILETFALVEIASGIGFLANWRNKVLKTKVNFFRQPHNRPSPFDKVLRGKVGRAVTRQDRLRLQLADGLVKLIRKLVQYEAFRQVVRGLALAHSPMRKALRKKGERPW
Ga0187881_100645305F028392N/ADVRMSKTTAVVKLPEILRNGSSHLVKLAGKVDSFSLVLQRTPECQLRRQIEKEYHAMVFATRKEVRKYCPKYRYFPGEGILDFSTDCASGQLEAGDRGKPPRPKRGRLCQECCFYLGEPEEQVPEMTLGGKPEHLAPPA
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