NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0187881_10067424

Scaffold Ga0187881_10067424


Overview

Basic Information
Taxon OID3300018024 Open in IMG/M
Scaffold IDGa0187881_10067424 Open in IMG/M
Source Dataset NamePeatland microbial communities from SPRUCE experiment site at the Marcell Experimental Forest, Minnesota, USA - June2016WEW_19_100
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1682
Total Scaffold Genes4 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)3 (75.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (100.00%)
Associated Families2

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Wetlands → Bog → Peatland → Peatland Microbial Communities From Minnesota, Usa, Analyzing Carbon Cycling And Trace Gas Fluxes

Source Dataset Sampling Location
Location NameUSA: Minnesota
CoordinatesLat. (o)47.5028Long. (o)-93.4828Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F016632Metagenome / Metatranscriptome245Y
F028392Metagenome191Y

Sequences

Protein IDFamilyRBSSequence
Ga0187881_100674241F016632AGGAGGLTGILETFALVEVGSAIGFLANWRNKVLKTKVNFFRQPNNRASPFDKALRGKVGRAVTRQDRLRLQLADGLVNLIRKLVQYEAFRQVVRGLALAHSPMRQALRKKGG
Ga0187881_100674243F028392AGGAMPKTIAVVQLPEILRKGSSHLVKLAGKIDSFSLVLQRTPECQLKHQVEKEYHAMVFATRKEVRKYCPKYRYFSGEGILDFSTDCASGQLEPGDLGKPPQPKRGKLCHQCCFFLGEPEEQVAGIAVTGSPRHLAPAN
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