NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0187885_10129812

Scaffold Ga0187885_10129812


Overview

Basic Information
Taxon OID3300018025 Open in IMG/M
Scaffold IDGa0187885_10129812 Open in IMG/M
Source Dataset NamePeatland microbial communities from SPRUCE experiment site at the Marcell Experimental Forest, Minnesota, USA - June2016WEW_20_100
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1205
Total Scaffold Genes3 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)3 (100.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (100.00%)
Associated Families2

Taxonomy
All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Wetlands → Bog → Peatland → Peatland Microbial Communities From Minnesota, Usa, Analyzing Carbon Cycling And Trace Gas Fluxes

Source Dataset Sampling Location
Location NameUSA: Minnesota
CoordinatesLat. (o)47.5028Long. (o)-93.4828Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F011724Metagenome287Y
F062368Metagenome / Metatranscriptome130Y

Sequences

Protein IDFamilyRBSSequence
Ga0187885_101298122F062368GGAGGMAVSVSLVEQFIEETLAGPFVKNAKLIVTGLTTGGNNSVPHGLNDGKGNAVTPLSVSIEPSSNNNFYEYQAADSTNIYVGVGSGTGTSCNIYVEY
Ga0187885_101298123F011724GGAGGMSYCTVDDVCTAFPRFVRNAANSIQDSQIQGWLDDRKARIRSALYARGIDPDAMTLTTDQANFLRALNRDGGVADLADALQGNVSLQAGEESEATARRKSFELQIAEIKQGLYDKFFSQLARTVEIEPTLGGTAGGETDRS
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Institute for Fundamental Biomedical Research
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