NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0184605_10000001

Scaffold Ga0184605_10000001


Overview

Basic Information
Taxon OID3300018027 Open in IMG/M
Scaffold IDGa0184605_10000001 Open in IMG/M
Source Dataset NameGroundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM0_30_coex
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)199320
Total Scaffold Genes196 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)138 (70.41%)
Novel Protein Genes7 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)5 (71.43%)
Associated Families7

Taxonomy
All Organisms → cellular organisms → Bacteria(Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Sediment → Unclassified → Unclassified → Groundwater Sediment → Soil And Sediment Microbial Communities From The East River, Co, Usa

Source Dataset Sampling Location
Location NameUSA: East River, Colorado
CoordinatesLat. (o)38.9195Long. (o)-106.9496Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F000484Metagenome / Metatranscriptome1088Y
F001683Metagenome / Metatranscriptome652Y
F001801Metagenome / Metatranscriptome632Y
F004389Metagenome / Metatranscriptome440Y
F004535Metagenome / Metatranscriptome434Y
F017521Metagenome / Metatranscriptome240Y
F024279Metagenome / Metatranscriptome206Y

Sequences

Protein IDFamilyRBSSequence
Ga0184605_10000001127F024279AGAAGMRPLTLALAVLFPAATPAATQQAVDTTVAVQGFLQQDDEFGIWTIVVPLPLQVLGTRTFVLPVVGKRNRWTRYRNRYIEATGPVTRLPERGDPGIGMEIVKAKEIEPPGTARSTVDHGMTLHADVSLSVIPNRFSWHDDTGSQTGVNPMLLYTIVNRRAAPIFFFLPNDDFLCVTITPAKESAGWDSTTHVKNPDARRFAVQRAGGFRDAIHFPLDAAPRPGRYLAHVGICAVDDYDVTAEFQVQ
Ga0184605_10000001142F017521N/AMADESNVLPTSRIARWIGIGAVIAFTVALYFHDGRRVPPLTGAPSAAPTGQPDN
Ga0184605_100000014F001801AGGMKIFLRHLLLCAMPLLFGAGAGYYFTTIQGSCGAMVGALFSGKCAGRQRQYQTRFQFAGAGFGTLLGATLGTWLEHRRRRTVQPTTSEGEPS
Ga0184605_1000000147F001683N/AVDHESLVIILSTGGSPLDRTALDALADVAVTWVRVEREGEAACLAARLRHGDAPDDFRQRVRQWGAARGWAVTVAPGGRPR
Ga0184605_100000018F000484GGAVKGAVAATLLAALAACGPANPCTSSQMHLHTRFAQPYVGHWVVARGDTLTLPQLGDRFKLGTVVLDTARVVVGRACRFKGVLMFTVPRAETLAVTWSGTPEQALIYGWPVDLGPFAGIGAVRVGDSLAGAILFDSRLGVEVRAGVTARFIAGRARR
Ga0184605_1000000186F004535AGGAMQAAGFWFVRRATRAVVVAVGLMVLLALQPEPARPTGADSVRSGSHARALLLSDQARRYLALQYRSYPTEFMGCMIGEIHGNAVIVRRIAPADVEPTHSTQTRVVPEQTCEDAGWAGTVGMIHSHPDGDRCWYYFPGTSVASSDATSFGRQSYPVDAIMCGDRVVWVSRDMVQQEVPLVVRDTRLQPHRSQRGNRVHAGASAPDGADD
Ga0184605_1000000195F004389GGAGGMRRNIRVAALTTILLVPLIVSAPAGWRAVGSAQPAASYTFQGTVRAINARTGTLELVTGVGMSLRLVRMTTAATTRLVATGAALRVGDLKPGDVVRAECRRTAAGLVADRIEKLEVATP
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