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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |
| Basic Information | |
|---|---|
| Taxon OID | 3300018027 Open in IMG/M |
| Scaffold ID | Ga0184605_10000009 Open in IMG/M |
| Source Dataset Name | Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM0_30_coex |
| Source Dataset Category | Metagenome |
| Source Dataset Use Policy | Open |
| Sequencing Center | DOE Joint Genome Institute (JGI) |
| Sequencing Status | Permanent Draft |
| Scaffold Components | |
|---|---|
| Scaffold Length (bps) | 94717 |
| Total Scaffold Genes | 95 (view) |
| Total Scaffold Genes with Ribosome Binding Sites (RBS) | 65 (68.42%) |
| Novel Protein Genes | 4 (view) |
| Novel Protein Genes with Ribosome Binding Sites (RBS) | 3 (75.00%) |
| Associated Families | 4 |
| Taxonomy | |
|---|---|
| All Organisms → cellular organisms → Bacteria | (Source: IMG/M) |
| Source Dataset Ecosystem |
|---|
| Environmental → Aquatic → Sediment → Unclassified → Unclassified → Groundwater Sediment → Soil And Sediment Microbial Communities From The East River, Co, Usa |
| Source Dataset Sampling Location | ||||||||
|---|---|---|---|---|---|---|---|---|
| Location Name | USA: East River, Colorado | |||||||
| Coordinates | Lat. (o) | 38.9195 | Long. (o) | -106.9496 | Alt. (m) | Depth (m) | Location on Map | |
| Zoom: | Powered by OpenStreetMap © | |||||||
| Family | Category | Number of Sequences | 3D Structure? |
|---|---|---|---|
| F000195 | Metagenome / Metatranscriptome | 1659 | Y |
| F000727 | Metagenome / Metatranscriptome | 918 | Y |
| F001221 | Metagenome / Metatranscriptome | 743 | Y |
| F001794 | Metagenome / Metatranscriptome | 633 | Y |
| Protein ID | Family | RBS | Sequence |
|---|---|---|---|
| Ga0184605_1000000965 | F000727 | N/A | MKFAMLVPALMWVAACQTRPLARETSRGDSLDFTRLVPRDSTDSTLLIPRVITEPSVVLFWLRAADTLGADERADTFDDLKYYTEQVASALEANGVRLLATNVDTVYVALPNNTRRTILLSGLDYPFGYLLIDPGGPERILTGVYADEELMDELRAYFDLPDDTTSVQPRITT |
| Ga0184605_1000000985 | F001794 | GGAG | VKPVRFECSGSPADARARLEAVIDGRPWNTAGMDGWIRGESVVLYYRDGAKYRALFRPTFVGRFREREGRTVLDGRFRMTWFARALLPVWLAPAIVCLVVALAPTRLEPQTPGIRIALALLGGLLGALAFGRFALEWWGRPGDVAAVSQAIRTAVKP |
| Ga0184605_1000000987 | F001221 | GGAGG | VDEPFPQMLTRNTVAALVLGFGLLLALPRHASLVSDFVDAFTVAFCFTFFGHYIEAILLTLPDIRSGVGRLVRVAGWFAGGLWCYLIARWLWVRLGRDLSDLPALVWGGVFLVALELVMNGVTRRQDATTARSSS |
| Ga0184605_1000000989 | F000195 | AGG | MDLTVTEAQYTAVRGARHLPDVLTNVLDGAARSGGGEGYVLHLTYEEATALNELCAWNVHTDAAGAVTPESQVFDDLVKAILTHPDY |
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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |