NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0187863_10007050

Scaffold Ga0187863_10007050


Overview

Basic Information
Taxon OID3300018034 Open in IMG/M
Scaffold IDGa0187863_10007050 Open in IMG/M
Source Dataset NamePeatland microbial communities from SPRUCE experiment site at the Marcell Experimental Forest, Minnesota, USA - June2016WEW_11_10
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)7619
Total Scaffold Genes8 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)5 (62.50%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Associated Families2

Taxonomy
All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae(Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Wetlands → Bog → Peatland → Peatland Microbial Communities From Minnesota, Usa, Analyzing Carbon Cycling And Trace Gas Fluxes

Source Dataset Sampling Location
Location NameUSA: Minnesota
CoordinatesLat. (o)47.5028Long. (o)-93.4828Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F015363Metagenome / Metatranscriptome255Y
F094157Metagenome / Metatranscriptome106Y

Sequences

Protein IDFamilyRBSSequence
Ga0187863_100070501F094157N/AVPAASAQSILGWVFFPHSVKYDDGTAWHAQSEGECFDVIWRDQQHPDLPVLPSRQIEMNP
Ga0187863_100070502F015363AGGAMKSSPVFDNSACYRGAERRRKNQMRRGRRALVSLCVLGLLALATCLSQAPNAFGQIQSTISCPAGHGYWDILSVMMMDPGLASGYHMEGITNGLPSSYVYTMWDPSQTKVYYVKNPQGNPWDINLYDSKYIYQWVTELDVWNGVNYWNDPTSCRKLNNGSQSNTADFSMRWSARCAAPAGENSSFWNPPPPTQSSNTNYFTYVEQALQSGSQNLGYAWLKLQKNGTMTITDNRANPPQSFSITTLPLQYTYSCSISGKADSCQFREVFDYGVDTGVNPVDNIKHSYGWVRWSYYVNSTLGNPDLPAAWVLSNTSTSDQLMAGQVNVNFQCF
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Institute for Fundamental Biomedical Research
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