NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0187863_10022957

Scaffold Ga0187863_10022957


Overview

Basic Information
Taxon OID3300018034 Open in IMG/M
Scaffold IDGa0187863_10022957 Open in IMG/M
Source Dataset NamePeatland microbial communities from SPRUCE experiment site at the Marcell Experimental Forest, Minnesota, USA - June2016WEW_11_10
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)3780
Total Scaffold Genes10 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)8 (80.00%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)3 (100.00%)
Associated Families3

Taxonomy
All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Wetlands → Bog → Peatland → Peatland Microbial Communities From Minnesota, Usa, Analyzing Carbon Cycling And Trace Gas Fluxes

Source Dataset Sampling Location
Location NameUSA: Minnesota
CoordinatesLat. (o)47.5028Long. (o)-93.4828Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F001596Metagenome / Metatranscriptome666Y
F010114Metagenome / Metatranscriptome308Y
F017965Metagenome / Metatranscriptome237Y

Sequences

Protein IDFamilyRBSSequence
Ga0187863_100229574F010114GAGGMIIELNDDETRLLYNVLLEQAQEHSSYASTSEVAERLCELATRFGRPVRELPNITIA
Ga0187863_100229575F001596AGGAGMAQVHSIAEAVDARNHASPAEIVACFQDQRNILGRLAFLITGDQATAEQAVIQACEMTLRGNSPFRDWLFEWAKAATIASAISHGTAAIRACEAAYKDRQCPHLEHQSQGDAEERAASIDLILATDAQILIADLDPLCRAVLVLRVAIRSSIQDCALRLNVSRAAVVGANSHALTWLHDGHVGPSKFIARIL
Ga0187863_100229576F017965AGGAGMVPAESVCSNRIALTDMSEKIGHRDPLYLFACHLEWRIKRNLAAYEELLAALDDQDDDIRCLAESLLHRSSPRPERTATVSNPGEVAE
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