Basic Information | |
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Taxon OID | 3300018035 Open in IMG/M |
Scaffold ID | Ga0187875_10048695 Open in IMG/M |
Source Dataset Name | Peatland microbial communities from SPRUCE experiment site at the Marcell Experimental Forest, Minnesota, USA - June2016WEW_17_10 |
Source Dataset Category | Metagenome |
Source Dataset Use Policy | Open |
Sequencing Center | DOE Joint Genome Institute (JGI) |
Sequencing Status | Permanent Draft |
Scaffold Components | |
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Scaffold Length (bps) | 2479 |
Total Scaffold Genes | 5 (view) |
Total Scaffold Genes with Ribosome Binding Sites (RBS) | 4 (80.00%) |
Novel Protein Genes | 2 (view) |
Novel Protein Genes with Ribosome Binding Sites (RBS) | 2 (100.00%) |
Associated Families | 2 |
Taxonomy | |
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All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Methylocystaceae → Methylosinus | (Source: UniRef50) |
Source Dataset Ecosystem |
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Environmental → Aquatic → Freshwater → Wetlands → Bog → Peatland → Peatland Microbial Communities From Minnesota, Usa, Analyzing Carbon Cycling And Trace Gas Fluxes |
Source Dataset Sampling Location | ||||||||
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Location Name | USA: Minnesota | |||||||
Coordinates | Lat. (o) | 47.5028 | Long. (o) | -93.4828 | Alt. (m) | Depth (m) | Location on Map | |
Zoom: | Powered by OpenStreetMap © |
Family | Category | Number of Sequences | 3D Structure? |
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F076746 | Metagenome | 117 | Y |
F079475 | Metagenome | 115 | Y |
Protein ID | Family | RBS | Sequence |
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Ga0187875_100486952 | F076746 | GGAGG | MRLSFVAAAFAAPFVVSAALADIAPTPDRGPPSGDVGGLIFMVQSVQVAFGPANGPHYYKTEQVVVLTGCAEQTPNCALARAKNVVGMEVSAIDGAELMPGKGMVRQILAAFADSKAPATIALTFYARAADSPAVEVTFARR |
Ga0187875_100486953 | F079475 | GGA | MRRLAAIGLAFAATLAAARADIAPPPLQFIDVTAGDLAFLVIARDTTRPSHPTAQLVGCVDGKPNCALAQAKGLIGRRVVGFDGRDFDPNLALRAQILAAFSGDGAPATIEIDFDPEGAGGPLRIAFARR |
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