Scaffold Ga0181600

Basic Information
Taxon OID	3300018036 Open in IMG/M
Scaffold ID	Ga0181600_10004036 Open in IMG/M
Source Dataset Name	Coastal salt marsh microbial communities from the Groves Creek Marsh, Skidaway Island, Georgia - 041406US metaG (megahit assembly)
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Basic Information

Taxon OID

Scaffold ID

Source Dataset Name

Coastal salt marsh microbial communities from the Groves Creek Marsh, Skidaway Island, Georgia - 041406US metaG (megahit assembly)

Source Dataset Category

Metagenome

Source Dataset Use Policy

Open

Sequencing Center

DOE Joint Genome Institute (JGI)

Sequencing Status

Permanent Draft

Scaffold Components
Scaffold Length (bps)	11171
Total Scaffold Genes	17 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	9 (52.94%)
Novel Protein Genes	6 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	2 (33.33%)
Associated Families	6

Scaffold Components

Scaffold Length (bps)

11171

Total Scaffold Genes

17 (view)

Total Scaffold Genes with Ribosome Binding Sites (RBS)

9 (52.94%)

Novel Protein Genes

6 (view)

Novel Protein Genes with Ribosome Binding Sites (RBS)

2 (33.33%)

Associated Families

Taxonomy
Not Available	(Source: )

Taxonomy

Not Available

(Source: )

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Intertidal Zone → Salt Marsh → Salt Marsh → Coastal Salt Marsh Microbial Communities From The Groves Creek Marsh, Skidaway Island, Georgia

Source Dataset Ecosystem

Environmental → Aquatic → Marine → Intertidal Zone → Salt Marsh → Salt Marsh → Coastal Salt Marsh Microbial Communities From The Groves Creek Marsh, Skidaway Island, Georgia

Source Dataset Sampling Location
Location Name	USA: Georgia
Coordinates	Lat. (^o)	31.972	Long. (^o)	-81.028	Alt. (m)	Depth (m)	0
Location on Map

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Source Dataset Sampling Location

Location Name

USA: Georgia

Coordinates

Lat. (^o)

31.972

Long. (^o)

-81.028

Alt. (m)

Depth (m)

Location on Map

Zoom:

Associated Families

Family	Category	Number of Sequences	3D Structure?
F007167	Metagenome / Metatranscriptome	356	N
F008746	Metagenome / Metatranscriptome	328	N
F021101	Metagenome / Metatranscriptome	220	N
F032641	Metagenome / Metatranscriptome	179	N
F046347	Metagenome / Metatranscriptome	151	N
F078652	Metagenome / Metatranscriptome	116	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0181600_1000403610	F007167	GAG	MVDLFLSISFVMHSGKAFTIILSFNTSMEVKDAIFGFYLSPSAAVYIPKEGVESKKMADGTIIKVPKYMYHPLTIEIMPRADYKTIQHPRRKKFLFSMRETKPVPADIRKYIENPEPEKLREALVVIQRRIRQMFETPIQTMTLVAFRFDGVPWKVHRMHWDEKQEVSYRKDGEWVTTTMKRLGNPWDLKNKVERDRKKAELFNIINNLLEDKDKIPYVSRMLIDRFR
Ga0181600_1000403611	F046347	GAGG	MILYEWQTKMGELVEIYEEIGDHTRANTFSEAVQQIVNHAEQFDILVKTTKDVEKFKGLEGVGRSTLELFKEFVTTGEMKRLRDLRGEDPWTRI
Ga0181600_1000403612	F032641	N/A	MNAVSNNTSCMAGLANLGVATAFGALMVSMEQTCGAFLVEGQRQRLAAMQALKAGGEASELEIDDNQMGLLQAGKAFAMVCLFGIFFMVTTSPLVSKKRIFPMKTFTYLLAFLAFLAFALQMYLMRSIKKGITNADRTMRFSLAVIYMIFMGISLFVMFNY
Ga0181600_100040364	F021101	N/A	MWLSPVFIGIHSFFEKRFSAKKTHVIVNMFHVASAFTWNPNFIVSRSYFLADFFLLYKNRQAYPGLWQILLAHHVISYAILTTEQDNEDVNLALKWAEISNLSLAVYEIYPNILTKTARVIIYPWSRCVMLPMVLVESTKTLGVKALVLGFPIVGGSFWWSWKILKDFLRK
Ga0181600_100040366	F008746	N/A	MRFNKEGFLKALNKNSKQAIIAMRDSPELKKAVIVDVLQRFINILKTEKFPGGVTMVPNGIFLYGGQVVQEIFQQTKKLVDPKIRAAMEMTPSSDYDGQLILKFKENGKISSKENISKEIKLKAFLKNAMTKAAKPYGALFDVSVRTRLPHVIDVSLSDGINGFDYAEFHAVNGYILDRVGNEYTERGSDRLAQTKCCIETLKSLGLPVLNVKSLLYDQLFALDSMLTGNSHRKAVRPDKCQQRFVRMTFLYDLMKKTKKSIPKNVTLLVNDIVERMDKPKYKNYFKQCSVKIH
Ga0181600_100040369	F078652	N/A	MAQYKINSSELGNLAGYGAKFCSPREAAEKFWKRNRPGAFNDYVKNHGQPTWHKKDAFVYGNVNAKQIMEEARKVKTETTSDIGGILKSVSDDKRATDFTSEQKQFLEEATRTRVFQHHGTRKEDSTLDQWCTQNGKDAHKPTKKFTLQVHPEVTLNGYIDGITTDGELVEIKNRAGGRLFNEVRDYEMAQCQAYLRMLEIERGFLVECLRQEGREPKLNTIPFTRDDEFWEDTIERVLSNIFDPRFECFRVTETDQSAS

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Scaffold Ga0181600_10004036

Overview

Ecosystem & Geography

Associated Families

Sequences