Scaffold Ga0181600

Basic Information
Taxon OID	3300018036 Open in IMG/M
Scaffold ID	Ga0181600_10015351 Open in IMG/M
Source Dataset Name	Coastal salt marsh microbial communities from the Groves Creek Marsh, Skidaway Island, Georgia - 041406US metaG (megahit assembly)
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Basic Information

Taxon OID

Scaffold ID

Source Dataset Name

Coastal salt marsh microbial communities from the Groves Creek Marsh, Skidaway Island, Georgia - 041406US metaG (megahit assembly)

Source Dataset Category

Metagenome

Source Dataset Use Policy

Open

Sequencing Center

DOE Joint Genome Institute (JGI)

Sequencing Status

Permanent Draft

Scaffold Components
Scaffold Length (bps)	5462
Total Scaffold Genes	12 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	5 (41.67%)
Novel Protein Genes	4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	3 (75.00%)
Associated Families	4

Scaffold Components

Scaffold Length (bps)

5462

Total Scaffold Genes

12 (view)

Total Scaffold Genes with Ribosome Binding Sites (RBS)

5 (41.67%)

Novel Protein Genes

4 (view)

Novel Protein Genes with Ribosome Binding Sites (RBS)

3 (75.00%)

Associated Families

Taxonomy
Not Available	(Source: )

Taxonomy

Not Available

(Source: )

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Intertidal Zone → Salt Marsh → Salt Marsh → Coastal Salt Marsh Microbial Communities From The Groves Creek Marsh, Skidaway Island, Georgia

Source Dataset Ecosystem

Environmental → Aquatic → Marine → Intertidal Zone → Salt Marsh → Salt Marsh → Coastal Salt Marsh Microbial Communities From The Groves Creek Marsh, Skidaway Island, Georgia

Source Dataset Sampling Location
Location Name	USA: Georgia
Coordinates	Lat. (^o)	31.972	Long. (^o)	-81.028	Alt. (m)	Depth (m)	0
Location on Map

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Source Dataset Sampling Location

Location Name

USA: Georgia

Coordinates

Lat. (^o)

31.972

Long. (^o)

-81.028

Alt. (m)

Depth (m)

Location on Map

Zoom:

Associated Families

Family	Category	Number of Sequences	3D Structure?
F014254	Metagenome / Metatranscriptome	264	N
F017634	Metagenome / Metatranscriptome	239	Y
F030744	Metagenome / Metatranscriptome	184	N
F077250	Metagenome / Metatranscriptome	117	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0181600_100153511	F030744	N/A	MAAPTGVVPALNPAEAVYFISLYFFNYFVLQLVSKVMALMNKTEPAEGSDEERTATFQEFFTLLFYILSVISLLFITLQAKGSSRPATFSGLVVALIAVPSSLGQFDLFNDPYWKYLVPLGVSLVTNYYIG
Ga0181600_1001535112	F077250	AGGA	MNLYFIAFLIALVFIISYKPGSGTIQKWFGVKEGMHHEMMEGEAVEKPIFKVTSRDEINARELNNIFGAQQ
Ga0181600_100153514	F017634	AGTAG	MDSLNTIASIAFGMLATWIILDQREKYVSLQTDPGDDPSKYYASPMEVLNESLYVTNPESLYAGFSLEPGKTVQKVPVGPIVDRLGNVNEIPGLPARDILYPLIEDTDLEIEMIPAPGSGSGGVEAFPNA
Ga0181600_100153518	F014254	AGAAGG	MSFKDECERFGWWFRTKPQGTTITHTLMNGSGVLIVPLQQRERFYEMCMKCLVNREKLFMVEQTKSSDRFRMFLDIDYVTSGEQGAVTDETIKRWATQLYVAFPTLGSVLVSTCTRKQGDDFKNGIHFSWPSVTVTSTSALNILNRVTAVLVDYDPDVPWKTVLDKSVFKTGLRTIWSYKVKRDTKELVEPYVPRFEISKDGFKDITKDTPAAKILQYFSILPHGTESEHFGNSETIISGTNADDELLTWLKEMYPHHKIPGIDKILPKKTHWVISVRSKYCEFIKGEHQHNHGWFLIDKTSKTIISKCHDEDHKNLNGRKYMVHPSIIKYLQKLENKV

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Scaffold Ga0181600_10015351

Overview

Ecosystem & Geography

Associated Families

Sequences