NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0181600_10081237

Scaffold Ga0181600_10081237


Overview

Basic Information
Taxon OID3300018036 Open in IMG/M
Scaffold IDGa0181600_10081237 Open in IMG/M
Source Dataset NameCoastal salt marsh microbial communities from the Groves Creek Marsh, Skidaway Island, Georgia - 041406US metaG (megahit assembly)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1963
Total Scaffold Genes7 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)6 (85.71%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)3 (100.00%)
Associated Families3

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Intertidal Zone → Salt Marsh → Salt Marsh → Coastal Salt Marsh Microbial Communities From The Groves Creek Marsh, Skidaway Island, Georgia

Source Dataset Sampling Location
Location NameUSA: Georgia
CoordinatesLat. (o)31.972Long. (o)-81.028Alt. (m)Depth (m)0
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F007006Metagenome / Metatranscriptome360Y
F020467Metagenome / Metatranscriptome224Y
F028356Metagenome / Metatranscriptome192Y

Sequences

Protein IDFamilyRBSSequence
Ga0181600_100812373F020467AGGAMHKRPSLTEAKAVLTQHSPATMEEYELLKESHGEFFAARFIVDIVDHFNHLQEKVING
Ga0181600_100812375F028356GAGGMFFKLTSRNAYRDLIRNSRRICIADISDQEKSSAFQELWQLLHQKLDETERSLNVQPAYAQRCDHWNQRDVRSIKPVKNENNPWLRFKREFVDAMSQDVELHAKRVSTALAWFYADPWKDDWIR
Ga0181600_100812377F007006GAGGMEKALQEEIRKEINRIVDLMIQADSIRESIAELKKDIKNEYGLPVTTITKVATIIRKQNLEEEEQKWEEIK
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