NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0181600_10108773

Scaffold Ga0181600_10108773


Overview

Basic Information
Taxon OID3300018036 Open in IMG/M
Scaffold IDGa0181600_10108773 Open in IMG/M
Source Dataset NameCoastal salt marsh microbial communities from the Groves Creek Marsh, Skidaway Island, Georgia - 041406US metaG (megahit assembly)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1616
Total Scaffold Genes5 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)3 (60.00%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (66.67%)
Associated Families3

Taxonomy
All Organisms → cellular organisms → Bacteria(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Intertidal Zone → Salt Marsh → Salt Marsh → Coastal Salt Marsh Microbial Communities From The Groves Creek Marsh, Skidaway Island, Georgia

Source Dataset Sampling Location
Location NameUSA: Georgia
CoordinatesLat. (o)31.972Long. (o)-81.028Alt. (m)Depth (m)0
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F009139Metagenome / Metatranscriptome322N
F036244Metagenome / Metatranscriptome170N
F047465Metagenome / Metatranscriptome149N

Sequences

Protein IDFamilyRBSSequence
Ga0181600_101087733F036244N/AVDKEHKHTTLKILTYTIMQFTRLYFVVFLSFLFQFTFANGETESDESLLSELQSELQEVINWECSPDNPSLGKFINLKCNLLSTGD
Ga0181600_101087734F009139GGAGMRFLIIAAFLSSLSVYAEYKEDSFNEEIIRMPISFEHTQLGVTPKILTCIGEVIDFSSITLKRLIAYRDKREVIYSPETYWEKISFGNQLNVKNFKDYSFKGKAGDNLYWSSNQGSAKLNLKTDRFTANKDRIQLQAICKLRHKNWNEFGN
Ga0181600_101087735F047465AGGAGGMNNEKLLNELLVVRSCVQSQVPDASVRTQMLTILDKRIEEIKDELNAIEKAQIFGADMAMDVA
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