NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0181600_10156734

Scaffold Ga0181600_10156734


Overview

Basic Information
Taxon OID3300018036 Open in IMG/M
Scaffold IDGa0181600_10156734 Open in IMG/M
Source Dataset NameCoastal salt marsh microbial communities from the Groves Creek Marsh, Skidaway Island, Georgia - 041406US metaG (megahit assembly)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1260
Total Scaffold Genes4 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)2 (50.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Associated Families2

Taxonomy
All Organisms → Viruses → Predicted Viral(Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Intertidal Zone → Salt Marsh → Salt Marsh → Coastal Salt Marsh Microbial Communities From The Groves Creek Marsh, Skidaway Island, Georgia

Source Dataset Sampling Location
Location NameUSA: Georgia
CoordinatesLat. (o)31.972Long. (o)-81.028Alt. (m)Depth (m)0
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F002190Metagenome / Metatranscriptome585Y
F025307Metagenome / Metatranscriptome202Y

Sequences

Protein IDFamilyRBSSequence
Ga0181600_101567341F025307GGAGMPSEKTKKLLEGLGKITDSAPKAFAEQKYHSYTNRYYPTTLHTLPTTYDKAKRMKDEEGDEYIMIDRVYGSLYDDHLLQKDGSIYPGKLYKKRRLMTRKDPMTNEKTNFYSAC
Ga0181600_101567343F002190N/AMSSKLSYYICLVTKDGKTEEYGYGLPYKDIMEAVEEHYKVGADAVVMEMITEDEFNDRLPKPY

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