Scaffold Ga0181600_10175257

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

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Scaffold Ga0181600_10175257

Scaffold Ga0181600_10175257

Overview

Basic Information
Taxon OID	3300018036 Open in IMG/M
Scaffold ID	Ga0181600_10175257 Open in IMG/M
Source Dataset Name	Coastal salt marsh microbial communities from the Groves Creek Marsh, Skidaway Island, Georgia - 041406US metaG (megahit assembly)
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Scaffold Components
Scaffold Length (bps)	1168
Total Scaffold Genes	3 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	1 (33.33%)
Novel Protein Genes	2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	0 (0.00%)
Associated Families	2

Taxonomy
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage	(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Intertidal Zone → Salt Marsh → Salt Marsh → Coastal Salt Marsh Microbial Communities From The Groves Creek Marsh, Skidaway Island, Georgia

Source Dataset Sampling Location
Location Name	USA: Georgia
Coordinates	Lat. (^o)	31.972	Long. (^o)	-81.028	Alt. (m)		Depth (m)	0
Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F008028	Metagenome / Metatranscriptome	340	Y
F048333	Metagenome / Metatranscriptome	148	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0181600_101752572	F008028	N/A	MVYGVKVDGSTDQEWLDTALKNDYFKAAGLFATNSKFGDEDKPGAFTLLADTLMSKSLKTRKHPEVTRMFADYWVYLNEERPVRAKEARQLYEYFNLCYEQSITVDKQYLLEMVAFTKEYFEANFGENGSFWDKVKMSYTRWYAHANPDSYQEFGLKGFSTEMRTGIPFLIAQMKESTNLKTPKYTPNNGYTVTKQDLWK
Ga0181600_101752573	F048333	N/A	LQERLEKAIAKSPQFKEQLEAVVDEFRRRNCMPPCERGWTQFEDIKLCTAIQVSMDSILIDETMQRELNMRHILKILSYFSESMVMAIQVYQDPSRPGKYIAWDGQHTSIALFIILTKVFGERVAKAMVPVVVYSSHQKLEIRRNFICSTATQKKAWTLLILTSRWYTA

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