NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0181600_10195544

Scaffold Ga0181600_10195544


Overview

Basic Information
Taxon OID3300018036 Open in IMG/M
Scaffold IDGa0181600_10195544 Open in IMG/M
Source Dataset NameCoastal salt marsh microbial communities from the Groves Creek Marsh, Skidaway Island, Georgia - 041406US metaG (megahit assembly)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1083
Total Scaffold Genes3 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)2 (66.67%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (66.67%)
Associated Families3

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Intertidal Zone → Salt Marsh → Salt Marsh → Coastal Salt Marsh Microbial Communities From The Groves Creek Marsh, Skidaway Island, Georgia

Source Dataset Sampling Location
Location NameUSA: Georgia
CoordinatesLat. (o)31.972Long. (o)-81.028Alt. (m)Depth (m)0
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F001607Metagenome / Metatranscriptome664Y
F081297Metagenome / Metatranscriptome114Y
F082388Metagenome / Metatranscriptome113Y

Sequences

Protein IDFamilyRBSSequence
Ga0181600_101955441F081297AGCAGGMVNRPSVPEVITVNSEELQTLIRDLLPSQNGFGSELQATNVITPIIDLTAAAEGSALATDLARALAFGSQTSIQITNGTTVLTTAPGFYRVIGTATLKD
Ga0181600_101955442F001607AGGMPVIANNLSLTAGSSSVNVFDNTNYQFINEGTELRVSAAVVGANDGIQGANVNYRFTINNTEFADDAIVPALVTGEPFTDGAASYRTNSVIATGQARNRPLLVFRNQTAGTLIVKYYVFISQQA
Ga0181600_101955443F082388N/ASRPGTGGLIGGLAAGGVVDFFIDQFGQQKKLVITRKMQRDVKKLFMMSGGDFNMTAELYRMATGRSITGEQVVKIITKTFKNQGPYVTKAAVRKTRSTIRKMETLCDLKDRLCPPKRRAPARRRTMSTSITQVK
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