NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0187855_10000521

Scaffold Ga0187855_10000521


Overview

Basic Information
Taxon OID3300018038 Open in IMG/M
Scaffold IDGa0187855_10000521 Open in IMG/M
Source Dataset NamePeatland microbial communities from SPRUCE experiment site at the Marcell Experimental Forest, Minnesota, USA - June2016WEW_8_10
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)33269
Total Scaffold Genes30 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)24 (80.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (100.00%)
Associated Families2

Taxonomy
All Organisms → cellular organisms → Bacteria(Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Wetlands → Bog → Peatland → Peatland Microbial Communities From Minnesota, Usa, Analyzing Carbon Cycling And Trace Gas Fluxes

Source Dataset Sampling Location
Location NameUSA: Minnesota
CoordinatesLat. (o)47.5028Long. (o)-93.4828Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F062060Metagenome / Metatranscriptome131Y
F105981Metagenome / Metatranscriptome100Y

Sequences

Protein IDFamilyRBSSequence
Ga0187855_1000052115F105981AGGAGMKNNLSRILAIVAIALVAICAAPAPAAAQNAYNGRFTLPDDVRWGAAQLPAGEYTFSLKSSVLPAQIVIHGPNGTSMVMTSISELKKGDAPSSLTIQHRFGMRVVSDLYLAELGIDLRYAAPKLPHNEIAQGPTETEQVLVAMATK
Ga0187855_1000052122F062060AGGAGGVEFLFDILKKTDRANFAWIEAVQDLQTAESRIRELQAHSPGEYVVFSQRTQQIVGRFNSRMADPSGS
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Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"
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