NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0187855_10000962

Scaffold Ga0187855_10000962


Overview

Basic Information
Taxon OID3300018038 Open in IMG/M
Scaffold IDGa0187855_10000962 Open in IMG/M
Source Dataset NamePeatland microbial communities from SPRUCE experiment site at the Marcell Experimental Forest, Minnesota, USA - June2016WEW_8_10
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)23890
Total Scaffold Genes37 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)31 (83.78%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (100.00%)
Associated Families2

Taxonomy
All Organisms → cellular organisms → Bacteria → Acidobacteria(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Wetlands → Bog → Peatland → Peatland Microbial Communities From Minnesota, Usa, Analyzing Carbon Cycling And Trace Gas Fluxes

Source Dataset Sampling Location
Location NameUSA: Minnesota
CoordinatesLat. (o)47.5028Long. (o)-93.4828Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F007124Metagenome / Metatranscriptome357Y
F048525Metagenome / Metatranscriptome148Y

Sequences

Protein IDFamilyRBSSequence
Ga0187855_1000096219F007124AGGAGMKLFCGVMALACGSVALAGNNVPYPKENVAEFVVEKLDVTTLPSTIRPKPEKRKKTFGDYSYVTRRLDEKEALVEATPGGPQINIRILELETSGIYVCVGGPAKNVSGGQIQRVFLLKMKNASGLLKGNESSKEFDGCPVIGVDPAAVTDSYGD
Ga0187855_1000096227F048525AGGAGMRKQCLRILIALIGVAGLGMAARGQAIDQIVLNVRYEFVVAGKTLPAGKYTVKRLSDTDPDVLILSSFENRTNAVVLPTTKVDSSSADKVQVSFEEVGGEHFLSKIETPDHVFTIAVSHSEILEAAARSNRGTSASGSSAGN
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