NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0187855_10001558

Scaffold Ga0187855_10001558


Overview

Basic Information
Taxon OID3300018038 Open in IMG/M
Scaffold IDGa0187855_10001558 Open in IMG/M
Source Dataset NamePeatland microbial communities from SPRUCE experiment site at the Marcell Experimental Forest, Minnesota, USA - June2016WEW_8_10
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)18107
Total Scaffold Genes22 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)10 (45.45%)
Novel Protein Genes1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families1

Taxonomy
All Organisms → cellular organisms → Bacteria(Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Wetlands → Bog → Peatland → Peatland Microbial Communities From Minnesota, Usa, Analyzing Carbon Cycling And Trace Gas Fluxes

Source Dataset Sampling Location
Location NameUSA: Minnesota
CoordinatesLat. (o)47.5028Long. (o)-93.4828Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F038380Metagenome166Y

Sequences

Protein IDFamilyRBSSequence
Ga0187855_100015589F038380N/AVAVLLAALPAAPARQPSHDKTVWNYEGGLFLQTNGSIPNGPCFRISGHVAAAGFFDNLKRIDTDSGTVFRRGSETVTQFPDHVALEFVVFDHYDPTCPPQVENTNSSRYLTRALMSSLHLYLYWKHGVELRPIANVEPKYFSVDPVLPTATARAAAHGNPVPEKLAWSYEFLVPSAGVPVSDSLVLILRTPDNHIAARVAARM
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