NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0187862_10144191

Scaffold Ga0187862_10144191


Overview

Basic Information
Taxon OID3300018040 Open in IMG/M
Scaffold IDGa0187862_10144191 Open in IMG/M
Source Dataset NamePeatland microbial communities from SPRUCE experiment site at the Marcell Experimental Forest, Minnesota, USA - June2016WEW_10_150
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1611
Total Scaffold Genes2 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Associated Families2

Taxonomy
All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium SCN 57-15(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Wetlands → Bog → Peatland → Peatland Microbial Communities From Minnesota, Usa, Analyzing Carbon Cycling And Trace Gas Fluxes

Source Dataset Sampling Location
Location NameUSA: Minnesota
CoordinatesLat. (o)47.5028Long. (o)-93.4828Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F037652Metagenome / Metatranscriptome167N
F064316Metagenome128N

Sequences

Protein IDFamilyRBSSequence
Ga0187862_101441911F064316N/AEASLEVADPKAVKPARKVGALKMLLRQFEATGNPPLQGEEVLPTKLVGDGNYHWYPLAWLRWLAKWERLKTLVLVIILLGLLAGYGLIRQRRSCQVTLPEPSTEMLLKAKGFDTFNQNQAEAFILFVANAANQASSEGMPNLNLLEGSIDSAIYLRLQQKGMSQQLKNVLPSEFPIYTLYISEVTRWRYNPATRIVSACVKGFRLSHTLSGKSGMEPYRAQIEIFWEPMSNRNKWGYYVQRLDEFYGAAAQAYDAELKTRDRTGA
Ga0187862_101441912F037652GGAMPYTHFWSEEPEARRRAWRPTDEVRRRLMRLWVIQALLLAAIVLVAGALTRESKRVPPIFARLPNGVIFETTTGDLQMDRLARTELVNNVLQILYYQEGSFNYLATIRQNVKPQLVGRFRAEMQDASQQTNSTVYLNVVETFEALNVPAKGFDAVTKGVLSKRTSQESASAPIYIRTRWLLAGDRYLLSRVQ
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