NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0181601_10446484

Scaffold Ga0181601_10446484


Overview

Basic Information
Taxon OID3300018041 Open in IMG/M
Scaffold IDGa0181601_10446484 Open in IMG/M
Source Dataset NameCoastal salt marsh microbial communities from the Groves Creek Marsh, Skidaway Island, Georgia - 041407BS metaG (megahit assembly)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)683
Total Scaffold Genes3 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)3 (100.00%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)3 (100.00%)
Associated Families3

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Intertidal Zone → Salt Marsh → Salt Marsh → Coastal Salt Marsh Microbial Communities From The Groves Creek Marsh, Skidaway Island, Georgia

Source Dataset Sampling Location
Location NameUSA: Georgia
CoordinatesLat. (o)31.972Long. (o)-81.028Alt. (m)Depth (m)0
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F035273Metagenome172Y
F040601Metagenome161Y
F046983Metagenome150Y

Sequences

Protein IDFamilyRBSSequence
Ga0181601_104464841F046983AGGAGMKLPEYLNKESTHTTIGVNTMSLIGLSLMWGHMTDMISLWFLPLTIITLLAGFGNEIRKRDA
Ga0181601_104464842F035273AGGAMIKQPYKVWDRQTQSMTQYTPKKLYKIVVEYPVTNRTLEFIGMDRGSCIMQAEVHKEVDDVMMMASEEEITLYNKEKI
Ga0181601_104464843F040601AGGAGMANVHYVIKVIEPEKEYLKTFVNGKLDNCRQQAQEYLWSCPEDTKYIYIATRIKND
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Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"
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