NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0187871_10037020

Scaffold Ga0187871_10037020


Overview

Basic Information
Taxon OID3300018042 Open in IMG/M
Scaffold IDGa0187871_10037020 Open in IMG/M
Source Dataset NamePeatland microbial communities from SPRUCE experiment site at the Marcell Experimental Forest, Minnesota, USA - June2016WEW_16_10
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)3015
Total Scaffold Genes5 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)4 (80.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (100.00%)
Associated Families2

Taxonomy
All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Wetlands → Bog → Peatland → Peatland Microbial Communities From Minnesota, Usa, Analyzing Carbon Cycling And Trace Gas Fluxes

Source Dataset Sampling Location
Location NameUSA: Minnesota
CoordinatesLat. (o)47.5028Long. (o)-93.4828Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F003832Metagenome / Metatranscriptome466Y
F005268Metagenome / Metatranscriptome406Y

Sequences

Protein IDFamilyRBSSequence
Ga0187871_100370203F005268GAGGVNRSMNDNEDEPDELQVWSVLREAGLVEIRLDEFAQRIRDVKHMVTGRLFDLLNINTGVQERESAAYSLGTLKGLELKVLANAPKPPDPSEM
Ga0187871_100370204F003832GAGMKSAAKQLSTAGNWPPQEGQVVSFRTSTASDASETAILKEVHWGLVWRDFVLEDGRVVPEHRILGCPQPQAWRKISQVTDQEREECEERLLSMAGAGMDPRERDQSFWAELNQYLAYTYLRFKPGGSRIQVQDQDQKREKDR
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