NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0187890_10002778

Scaffold Ga0187890_10002778


Overview

Basic Information
Taxon OID3300018044 Open in IMG/M
Scaffold IDGa0187890_10002778 Open in IMG/M
Source Dataset NamePeatland microbial communities from SPRUCE experiment site at the Marcell Experimental Forest, Minnesota, USA - June2016WEW_21_10
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)12159
Total Scaffold Genes16 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)12 (75.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (100.00%)
Associated Families2

Taxonomy
All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae(Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Wetlands → Bog → Peatland → Peatland Microbial Communities From Minnesota, Usa, Analyzing Carbon Cycling And Trace Gas Fluxes

Source Dataset Sampling Location
Location NameUSA: Minnesota
CoordinatesLat. (o)47.5028Long. (o)-93.4828Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F000633Metagenome / Metatranscriptome971Y
F030197Metagenome / Metatranscriptome186Y

Sequences

Protein IDFamilyRBSSequence
Ga0187890_100027786F000633GAGGLRFEVNGQMFFVNFIPEEGRWYCFAPTATGVQRIPVSIDATPFEAFTVAVDEQAKEVVN
Ga0187890_100027789F030197GAGMSDGELLVLIPQSSELTPIAQQALANEMRSRGLKAEVESEKASAPSQFKPPPAFFEHESPKLRDSTGYDPSGPDSSQEDQYDEDRKVVELCTVWSVRDALKVQTILDGLGIPFLMGPEKATGVDGVTSNFANGVGVQIMRIGLAWAGPAMAHYEPEDDPTPRESKELDELVVRCPRCHSAEVVFEGGTSTMVVATDDSSQKYKWTCDSCGLQWEDDGVAKEE
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