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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |
| Basic Information | |
|---|---|
| Taxon OID | 3300018044 Open in IMG/M |
| Scaffold ID | Ga0187890_10006014 Open in IMG/M |
| Source Dataset Name | Peatland microbial communities from SPRUCE experiment site at the Marcell Experimental Forest, Minnesota, USA - June2016WEW_21_10 |
| Source Dataset Category | Metagenome |
| Source Dataset Use Policy | Open |
| Sequencing Center | DOE Joint Genome Institute (JGI) |
| Sequencing Status | Permanent Draft |
| Scaffold Components | |
|---|---|
| Scaffold Length (bps) | 8005 |
| Total Scaffold Genes | 10 (view) |
| Total Scaffold Genes with Ribosome Binding Sites (RBS) | 5 (50.00%) |
| Novel Protein Genes | 4 (view) |
| Novel Protein Genes with Ribosome Binding Sites (RBS) | 1 (25.00%) |
| Associated Families | 4 |
| Taxonomy | |
|---|---|
| All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Bryobacterales → Solibacteraceae → Candidatus Sulfopaludibacter → unclassified Candidatus Sulfopaludibacter → Candidatus Sulfopaludibacter sp. SbA4 | (Source: UniRef50) |
| Source Dataset Ecosystem |
|---|
| Environmental → Aquatic → Freshwater → Wetlands → Bog → Peatland → Peatland Microbial Communities From Minnesota, Usa, Analyzing Carbon Cycling And Trace Gas Fluxes |
| Source Dataset Sampling Location | ||||||||
|---|---|---|---|---|---|---|---|---|
| Location Name | USA: Minnesota | |||||||
| Coordinates | Lat. (o) | 47.5028 | Long. (o) | -93.4828 | Alt. (m) | Depth (m) | Location on Map | |
| Zoom: | Powered by OpenStreetMap © | |||||||
| Family | Category | Number of Sequences | 3D Structure? |
|---|---|---|---|
| F000335 | Metagenome / Metatranscriptome | 1276 | Y |
| F000451 | Metagenome / Metatranscriptome | 1124 | Y |
| F002448 | Metagenome / Metatranscriptome | 558 | Y |
| F046491 | Metagenome / Metatranscriptome | 151 | Y |
| Protein ID | Family | RBS | Sequence |
|---|---|---|---|
| Ga0187890_100060141 | F046491 | N/A | DWSATAANVNLSMQNAFGESVEYQPMQAGEAVGTASTITIIRRIRERMEAGAVASVEEIDVNPTDLPALPARGDVVEAWGAVFTVTTVRQPDPYGMIHLTLTMQPPSQ |
| Ga0187890_100060142 | F002448 | N/A | MINPKTILAEWVTALQALPNLVEALGGNSAQIQFYSENITVFGQPTQANVRLAVLSMPPGSLMIVWNGSGPGRLGNALVFVHHFALFLRAPETANVGYEDLWTWIVEDIPENSTLKMLHTQIDPNAEPMDFYLPEARRNTIVISADGTTFEYFEVAVRLIEATNP |
| Ga0187890_100060147 | F000451 | AGGAG | MGFRHQPVVRHARFVYSPYTSDEMLGFGELLADTIRQRIQSGMNIYDQAAAALKPGRDGHKGYPDMKTARGLQPIRDWTWTGHTLRCLKVLVVNENRATLGFLDESLPGRMQTASEIAFYGNQIERMWGVSERDRAITVSAMENYRPLVVAVDGANGMDDQERAAVERASRGFRQIGAQQYFSGLKRVA |
| Ga0187890_100060149 | F000335 | N/A | MPGNLLYADPTGVMPFSLSTAFTEMREYVLLQNQYHDGTIHRSQLAQTSRRSYRQTKRLNATALAALYAFLEAQNGGLLPFFFYDPFDVIAGHLPGSNYDPTGANVQGRVTVVFRNNAWTQATDVCRSNVSGLELVEVA |
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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |