NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0187890_10101019

Scaffold Ga0187890_10101019


Overview

Basic Information
Taxon OID3300018044 Open in IMG/M
Scaffold IDGa0187890_10101019 Open in IMG/M
Source Dataset NamePeatland microbial communities from SPRUCE experiment site at the Marcell Experimental Forest, Minnesota, USA - June2016WEW_21_10
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1677
Total Scaffold Genes3 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)2 (66.67%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (100.00%)
Associated Families2

Taxonomy
All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales → Acetobacteraceae → Acidocella → Acidocella aminolytica → Acidocella aminolytica 101 = DSM 11237(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Wetlands → Bog → Peatland → Peatland Microbial Communities From Minnesota, Usa, Analyzing Carbon Cycling And Trace Gas Fluxes

Source Dataset Sampling Location
Location NameUSA: Minnesota
CoordinatesLat. (o)47.5028Long. (o)-93.4828Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F026770Metagenome196N
F029631Metagenome187N

Sequences

Protein IDFamilyRBSSequence
Ga0187890_101010192F029631GAGGMITPYPKVHRTRFAELGYWQVEPGCWSFVNFDEDGTPHQIGNKYVSKMELLSNLEGYAAEFGCDGAAKKESAPVLLTALQALLIYADRYSEEMRKIGRGAEELGKDAKFPGVGWQARAAIHTATGVWAD
Ga0187890_101010193F026770AGGAMETVFINQAGQPIPEQRRLIRSIEHLKRVLRRPGITLERLDFNGYRASPPRTILSVHSRYIVFEDGAHLTFPRRDEFDSREDFILWGRLAYRIGIAEEFQQP
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