 |
Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |
| Basic Information | |
|---|---|
| Taxon OID | 3300018047 Open in IMG/M |
| Scaffold ID | Ga0187859_10003623 Open in IMG/M |
| Source Dataset Name | Peatland microbial communities from SPRUCE experiment site at the Marcell Experimental Forest, Minnesota, USA - June2016WEW_10_10 |
| Source Dataset Category | Metagenome |
| Source Dataset Use Policy | Open |
| Sequencing Center | DOE Joint Genome Institute (JGI) |
| Sequencing Status | Permanent Draft |
| Scaffold Components | |
|---|---|
| Scaffold Length (bps) | 9442 |
| Total Scaffold Genes | 10 (view) |
| Total Scaffold Genes with Ribosome Binding Sites (RBS) | 4 (40.00%) |
| Novel Protein Genes | 3 (view) |
| Novel Protein Genes with Ribosome Binding Sites (RBS) | 2 (66.67%) |
| Associated Families | 3 |
| Taxonomy | |
|---|---|
| All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae | (Source: IMG/M) |
| Source Dataset Ecosystem |
|---|
| Environmental → Aquatic → Freshwater → Wetlands → Bog → Peatland → Peatland Microbial Communities From Minnesota, Usa, Analyzing Carbon Cycling And Trace Gas Fluxes |
| Source Dataset Sampling Location | ||||||||
|---|---|---|---|---|---|---|---|---|
| Location Name | USA: Minnesota | |||||||
| Coordinates | Lat. (o) | 47.5028 | Long. (o) | -93.4828 | Alt. (m) | Depth (m) | Location on Map | |
| Zoom: | Powered by OpenStreetMap © | |||||||
| Family | Category | Number of Sequences | 3D Structure? |
|---|---|---|---|
| F006909 | Metagenome / Metatranscriptome | 362 | Y |
| F012243 | Metagenome / Metatranscriptome | 282 | Y |
| F016839 | Metagenome / Metatranscriptome | 244 | Y |
| Protein ID | Family | RBS | Sequence |
|---|---|---|---|
| Ga0187859_100036231 | F006909 | N/A | EAQAQLSVAQRLRSEMSESLTAVLLSCELAMAVPNVPGAAAEKILAVDNLAREMRMKLGA |
| Ga0187859_100036237 | F016839 | GGAG | MFSIIFTWLIVAWGALACIYMLRCAWSRFPKRDVDDVIPFLYPVDISLAESLLDPASEFEYRWNLSPRQFRAAQRKRMRLYLELTRRMAHNSRVLVEYADAEKNNPDPRRASVATALQEKAIEVRLYALLAGIKLRLCLLLRSDILAVIPALAHLRTTCDIDGLETYSALKTVAAEAFVQLPPEELDSLSRNL |
| Ga0187859_100036238 | F012243 | GGA | MSLLFRYLPLGLLVLLLGVLLRRGAYKICPWFFTYALFGVAADLARFIVHNHPHPYYAVYWTTEAGYDLLGILVMYEVLRLVLGSITRAWWANAIFPTLLFAAAGIAWLRANAAPAQFGHRLGFYIVTGEIAVRLVQVFIFAGLVSLVPLIGLRWRQYPFGVATGFGLYATVSLVISTKLSDFGTRFIFLWNVTSLVAYSLAVLIWIWFFSVPQKVETSSSELSAPSPGDLKQYKNALRRMR |
| ⦗Top⦘ |
|
Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |