NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0181606_10033475

Scaffold Ga0181606_10033475


Overview

Basic Information
Taxon OID3300018048 Open in IMG/M
Scaffold IDGa0181606_10033475 Open in IMG/M
Source Dataset NameCoastal salt marsh microbial communities from the Groves Creek Marsh, Skidaway Island, Georgia - 041412US metaG (megahit assembly)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)3667
Total Scaffold Genes8 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)7 (87.50%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)3 (100.00%)
Associated Families3

Taxonomy
All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Maricaulales → Maricaulaceae → Maricaulis → unclassified Maricaulis → Maricaulis sp.(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Intertidal Zone → Salt Marsh → Salt Marsh → Coastal Salt Marsh Microbial Communities From The Groves Creek Marsh, Skidaway Island, Georgia

Source Dataset Sampling Location
Location NameUSA: Georgia
CoordinatesLat. (o)31.972Long. (o)-81.028Alt. (m)Depth (m)0
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F020913Metagenome / Metatranscriptome221N
F021778Metagenome / Metatranscriptome217N
F023859Metagenome / Metatranscriptome208N

Sequences

Protein IDFamilyRBSSequence
Ga0181606_100334755F021778GGAGGMAMPKFLEDYTTVDELISKMNKEYPECRLVAEMVDNGDDWVIFKSSFYENKEDTEPKATGYARQTKADHNSWFEMASTKANGRCLRVVFSESTTAEEMIGIAPSKEATPQKSIEKELDKAGIEYEDVSVSKTHVINNIKSFAMDVSSENKTNAANWYAQALGELGINETQLDINNMQTVKNKIQDIATELQVGGA
Ga0181606_100334756F020913AGTAGGMLGLFGRNKPLSVVEDIQLEKEPSEFRKVQYILELEGFICSLDPEFNKNGNLRKAVNRLRTQYNALIYTEVCNCDNKQYAKLKKNGSPFMHNAYIKDWAL
Ga0181606_100334758F023859AGGAMKKVIVKFIGVKKYLVRDDTDPEKIKSMFQKDLELLPPVWANNIEAVMYAKDVPEEEEE
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Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"
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