NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0181606_10211485

Scaffold Ga0181606_10211485


Overview

Basic Information
Taxon OID3300018048 Open in IMG/M
Scaffold IDGa0181606_10211485 Open in IMG/M
Source Dataset NameCoastal salt marsh microbial communities from the Groves Creek Marsh, Skidaway Island, Georgia - 041412US metaG (megahit assembly)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1119
Total Scaffold Genes4 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)3 (75.00%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)3 (100.00%)
Associated Families3

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Intertidal Zone → Salt Marsh → Salt Marsh → Coastal Salt Marsh Microbial Communities From The Groves Creek Marsh, Skidaway Island, Georgia

Source Dataset Sampling Location
Location NameUSA: Georgia
CoordinatesLat. (o)31.972Long. (o)-81.028Alt. (m)Depth (m)0
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F005496Metagenome / Metatranscriptome399Y
F057282Metagenome136N
F103093Metagenome101Y

Sequences

Protein IDFamilyRBSSequence
Ga0181606_102114851F057282AGGMSNMTKLEIGEKVEVLITKLTVMEEKIDNLQEGLANANRKIEDLDTSIKYAKGGLKVLVVIGTVTAILMGFVKLLGVIK
Ga0181606_102114852F103093AGGAGGMATEKELQKQLREVKREVRELREHNKFLLDRLEKAHERNAEVRKQMMTMTFDDVLKTQKELAEYQAKFKKDQELMEAFDKQSQVKLGELGA
Ga0181606_102114853F005496GAGGMNLDSKTIGIIMAIVIQSVSLVWFISKMDSRIANNERDMQRIMEMHKDYDKMQKQIDRISWLLDADARTN
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