NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0184620_10078428

Scaffold Ga0184620_10078428


Overview

Basic Information
Taxon OID3300018051 Open in IMG/M
Scaffold IDGa0184620_10078428 Open in IMG/M
Source Dataset NameGroundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM1_5_b1
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)985
Total Scaffold Genes3 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)2 (66.67%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (100.00%)
Associated Families2

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Sediment → Unclassified → Unclassified → Groundwater Sediment → Soil And Sediment Microbial Communities From The East River, Co, Usa

Source Dataset Sampling Location
Location NameUSA: East River, Colorado
CoordinatesLat. (o)38.9195Long. (o)-106.9496Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F021017Metagenome / Metatranscriptome221Y
F043277Metagenome / Metatranscriptome156N

Sequences

Protein IDFamilyRBSSequence
Ga0184620_100784282F021017GAGGMDENFRHDRTVRLLAARLDALAVASMRVPGGERMYRHHILAAVAATRHAIDLDLLSPTEADSIWAEVAKRHPDAGWCRSGPRLAA
Ga0184620_100784283F043277GAGMRRFAVLLVAVAVAASMGGAAHGTVAKTTGGVYLQLSEGAGFAKVRNRGTFIGRVKRGRIVATPNVNVNGCESRSDTNDNMTRCKGREITFNTVGAGRWRLKLRGRGIYGSGFVHGCLVLDGRDTGVTGTFRRGLDGEEQPWPHSRTRFTLGRG
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