NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0184620_10151832

Scaffold Ga0184620_10151832


Overview

Basic Information
Taxon OID3300018051 Open in IMG/M
Scaffold IDGa0184620_10151832 Open in IMG/M
Source Dataset NameGroundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM1_5_b1
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)749
Total Scaffold Genes3 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)1 (33.33%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (33.33%)
Associated Families3

Taxonomy
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Sediment → Unclassified → Unclassified → Groundwater Sediment → Soil And Sediment Microbial Communities From The East River, Co, Usa

Source Dataset Sampling Location
Location NameUSA: East River, Colorado
CoordinatesLat. (o)38.9195Long. (o)-106.9496Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F000280Metagenome / Metatranscriptome1383Y
F001935Metagenome / Metatranscriptome615Y
F002111Metagenome / Metatranscriptome592Y

Sequences

Protein IDFamilyRBSSequence
Ga0184620_101518321F001935N/AVFTQRLSSLEFYTYAAFFAVVVGSIAAILPGRKAPVRTEPYTDDELKAHDRRLPKYFLTGGAFLLLGGVHMVLKNLPWTADWLARAGYAG
Ga0184620_101518322F000280AGAAGGMAQNPDDRPRPARPLVGYRDVGEDIRHGRSAITRAWIVLAILIVIYLAWTLTVYFLEPGL
Ga0184620_101518323F002111N/ASSMTETLIPAARWPTVYASLQALKGHVQEYPGCQSFDVFVRAEGDGDVLVHCYTTWDTAGQLEVFLERGYTFERLLADIGSGLGPARSLVMEKVF
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