NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0184638_1000118

Scaffold Ga0184638_1000118


Overview

Basic Information
Taxon OID3300018052 Open in IMG/M
Scaffold IDGa0184638_1000118 Open in IMG/M
Source Dataset NameGroundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM3-1_50_b2
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)19662
Total Scaffold Genes21 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)13 (61.90%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)3 (100.00%)
Associated Families3

Taxonomy
All Organisms → cellular organisms → Bacteria(Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Sediment → Unclassified → Unclassified → Groundwater Sediment → Soil And Sediment Microbial Communities From The East River, Co, Usa

Source Dataset Sampling Location
Location NameUSA: East River, Colorado
CoordinatesLat. (o)38.9195Long. (o)-106.9496Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F002381Metagenome / Metatranscriptome566Y
F003580Metagenome / Metatranscriptome478Y
F040038Metagenome162Y

Sequences

Protein IDFamilyRBSSequence
Ga0184638_100011818F003580AGGLVLLLQSPDPDTVRAGLWARVAADSTDAPAWLELGRAYLQRSAEYHAHKQPAPVDTVFAHATLDTAQMAFDRAARWSPGTRTADSARVFRVYTFGERAYVDWEASGTAAATLTWHTLPEALRLPPVLEELGENLLRACPHQGVLFTAGELDTQAAWYLRFARGLRPDLVVIPMDRWRTDSVLRNRVLRELKTRDRSVRALAQTRAVCASMGFERPPEVRPAVKWNKRPLVWVTGKESKADRVPARDFVFAALRLAIDEHETWTQPALALYRRAADNVGALCKAFDTFELGSEVGCR
Ga0184638_10001187F040038GAGVRLALAVLLLPANARAQIDLRGLVTVTRADHRVDAGFGVERASGVLVGGATRLRLPHGIAFTVFGETGHLTAVQGTGGIDRDVSQLGAAVEFVPLAWLALESGVTVRSFGTVVARQRWTLVRAGVEARIPLSGETIWAIGRAHLLPVVSVNGLPNAATAFDAGTGLAYRRGRVILDLTYTVERCDFPWQGSTRRSEQFGTLMIRGGAQLRLN
Ga0184638_10001188F002381GGAGGMRGLTLLIATILTFGYGFAAQAAMTADRAATFRRLAGTVETSNPTEDANHVWYGGMLAPVTVETTAQPKCT
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