NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0184626_10007001

Scaffold Ga0184626_10007001


Overview

Basic Information
Taxon OID3300018053 Open in IMG/M
Scaffold IDGa0184626_10007001 Open in IMG/M
Source Dataset NameGroundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM3_60_b1
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)4330
Total Scaffold Genes7 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)5 (71.43%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)3 (100.00%)
Associated Families3

Taxonomy
All Organisms → cellular organisms → Bacteria(Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Sediment → Unclassified → Unclassified → Groundwater Sediment → Soil And Sediment Microbial Communities From The East River, Co, Usa

Source Dataset Sampling Location
Location NameUSA: East River, Colorado
CoordinatesLat. (o)38.9195Long. (o)-106.9496Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F003759Metagenome / Metatranscriptome470Y
F015782Metagenome252Y
F049512Metagenome146Y

Sequences

Protein IDFamilyRBSSequence
Ga0184626_100070012F003759GGAMAQSAIDRIPPGPKLDELTAEKVFGWKNVHNHEGSLVGKKQDKAGRRRLAKVPYYSTNPVHAYSIEDRMKQLGRLDRYLRELFRITHANNIPSEWASPDQRCRAAIKAMGEYGQVIPLNRSRKQPQRFAEK
Ga0184626_100070013F015782AGTAGMSQYKDHPIYGVAVPAPENRWYSRGLVFDRDLNQTIEIKRIESNPQTFKTKKQAEKYALELCKDWIDKRP
Ga0184626_100070014F049512GAGGMKFQSLFVGAVFLAGCASQQPPGSNEPKSQRNYNRDLYECEREATFAGVGNKQQVFDNCMKARGYKQK
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