NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0184626_10021532

Scaffold Ga0184626_10021532


Overview

Basic Information
Taxon OID3300018053 Open in IMG/M
Scaffold IDGa0184626_10021532 Open in IMG/M
Source Dataset NameGroundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM3_60_b1
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)2620
Total Scaffold Genes9 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)7 (77.78%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (100.00%)
Associated Families2

Taxonomy
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Sediment → Unclassified → Unclassified → Groundwater Sediment → Soil And Sediment Microbial Communities From The East River, Co, Usa

Source Dataset Sampling Location
Location NameUSA: East River, Colorado
CoordinatesLat. (o)38.9195Long. (o)-106.9496Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F013837Metagenome / Metatranscriptome268Y
F050357Metagenome / Metatranscriptome145N

Sequences

Protein IDFamilyRBSSequence
Ga0184626_100215323F050357GGAGVEGIRLWRANRQKLVGMVYLDKGVLDLDIQDDHERALVEEVFEQTGQVTWSFSRFDEGEWQENIAEPRTERWLWFVVANILYPMGYQADLGIGEDGEPTTG
Ga0184626_100215325F013837GGAGGMTTLMDSIREAPIPPIKPAVSLDTPRDAATDPRSLERSFEVESRGGHARTVVGRLAYFDEEAQTYMVLTRSGVLVRVPVRDITSSHGVPRRGPIVANALSKVSTLRNATTVSPH
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