NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0184621_10007514

Scaffold Ga0184621_10007514


Overview

Basic Information
Taxon OID3300018054 Open in IMG/M
Scaffold IDGa0184621_10007514 Open in IMG/M
Source Dataset NameGroundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM1_30_b1
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)3052
Total Scaffold Genes6 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)3 (50.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Associated Families2

Taxonomy
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi → Chloroflexi bacterium(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Sediment → Unclassified → Unclassified → Groundwater Sediment → Soil And Sediment Microbial Communities From The East River, Co, Usa

Source Dataset Sampling Location
Location NameUSA: East River, Colorado
CoordinatesLat. (o)38.9195Long. (o)-106.9496Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F011813Metagenome287Y
F077142Metagenome117Y

Sequences

Protein IDFamilyRBSSequence
Ga0184621_100075143F077142N/AVPKETIAIVLFMGLAFGLFWGCLSLVLWSANEHIPAWVIAPLWLTAEIATRLSVHPYLAAALASGFVGLVPATAFLALARLRGW
Ga0184621_100075144F011813GGAMTDEPSLKEIGERLERLDAPIRIWREQRDRAFAAAFGPQKGKLSNLMARLPQGANAAALGLGPRDEVFAVFDEICDLYARSDAPRCAIIRGIVHGREAHLLLDEYLGYASRILKQGGRPEWLERGIVAASIDDQRRDYRDWLMSLGDLYLSAWAAHLDPSPVLKRIAERSNPERHAAAPTPTRDALRGFEDSAYFATSIQPQLL
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