NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0184621_10083398

Scaffold Ga0184621_10083398


Overview

Basic Information
Taxon OID3300018054 Open in IMG/M
Scaffold IDGa0184621_10083398 Open in IMG/M
Source Dataset NameGroundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM1_30_b1
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1114
Total Scaffold Genes3 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)1 (33.33%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Associated Families2

Taxonomy
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Sediment → Unclassified → Unclassified → Groundwater Sediment → Soil And Sediment Microbial Communities From The East River, Co, Usa

Source Dataset Sampling Location
Location NameUSA: East River, Colorado
CoordinatesLat. (o)38.9195Long. (o)-106.9496Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F024164Metagenome / Metatranscriptome207Y
F049966Metagenome / Metatranscriptome146Y

Sequences

Protein IDFamilyRBSSequence
Ga0184621_100833982F024164GGCGGMEEQGIPQVTNAELIAYHETILLELRNRLDNYLDLGADDLIAADEAFNFAGQLQATLAEAVEHTASIRERLIEIQRKDS
Ga0184621_100833983F049966N/AMLYDVLVVSNGGGGKRFTTERDAPLSVGDTFDQDSEAYRVLAIQPGQGPFDSVIEAEWLGSSGLGELGANA

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