NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0187766_10027928

Scaffold Ga0187766_10027928


Overview

Basic Information
Taxon OID3300018058 Open in IMG/M
Scaffold IDGa0187766_10027928 Open in IMG/M
Source Dataset NameTropical peat soil microbial communities from peatlands in Department of Meta, Colombia - 0216_QUI02_MP05_20_MG
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)3260
Total Scaffold Genes7 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)7 (100.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (100.00%)
Associated Families2

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Wetlands → Unclassified → Tropical Peatland → Tropical Peatland Microbial Communities From Different Locations

Source Dataset Sampling Location
Location NameColombia: Department of Meta
CoordinatesLat. (o)3.8381Long. (o)-73.3194Alt. (m)Depth (m)0
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F028382Metagenome191Y
F037953Metagenome167Y

Sequences

Protein IDFamilyRBSSequence
Ga0187766_100279282F037953GGAGGMPRYHFVVRAHDHTHDDLDGMHFPSHEAAREHGHRIVRELREGGYNPENAALLIHDETGQIIHSITF
Ga0187766_100279283F028382GGAGGMGTPLTPMQKCERDIEALRQSIRQIFRDLSNLTLETHDRAAISKNIQSLQDDLRWGQEKFERGD

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