NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0187766_10171512

Scaffold Ga0187766_10171512


Overview

Basic Information
Taxon OID3300018058 Open in IMG/M
Scaffold IDGa0187766_10171512 Open in IMG/M
Source Dataset NameTropical peat soil microbial communities from peatlands in Department of Meta, Colombia - 0216_QUI02_MP05_20_MG
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1357
Total Scaffold Genes3 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)2 (66.67%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (66.67%)
Associated Families3

Taxonomy
All Organisms → cellular organisms → Bacteria → Acidobacteria(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Wetlands → Unclassified → Tropical Peatland → Tropical Peatland Microbial Communities From Different Locations

Source Dataset Sampling Location
Location NameColombia: Department of Meta
CoordinatesLat. (o)3.8381Long. (o)-73.3194Alt. (m)Depth (m)0
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F000703Metagenome / Metatranscriptome928Y
F000781Metagenome / Metatranscriptome895Y
F099605Metagenome103Y

Sequences

Protein IDFamilyRBSSequence
Ga0187766_101715121F000781N/AMLTVAQLAPLKDRDPYLYETLVKIVASVNATSQRAGVDPSTPAPAPTPVASISVQASNGWFDISIADPSDARPGLFYFAESDTSPAFGAPRVYFMGASRNLYTQLGNQTLYWRAYSQYVGSLPSPPVTFGAPPIAVAGGGSTGPSPLPSSGSGVFPNGVPRGGNGFGINPGSRIVKQTLL
Ga0187766_101715122F000703GGAMIVREYQERDLDALREIHAAQGFDYKLPDLSNPLFVTKLVLTDEKILGAAFLRLTAEAYLLLDPQAGTPRERWQWLLALHAAAERDAWQRGLEDVHAWLPPPIAKKFGKRIARLGWLRDDSWTPYSHKVTAHQQG
Ga0187766_101715123F099605AGGAGMPTTNNAASWDFNPNDPVNLSASFIFDTEDTQDSAPVAAALAAIQARLSHATLTATVATIGML
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Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"
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