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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |
| Basic Information | |
|---|---|
| Taxon OID | 3300018062 Open in IMG/M |
| Scaffold ID | Ga0187784_10022897 Open in IMG/M |
| Source Dataset Name | Tropical peat soil microbial communities from peatlands in Department of Meta, Colombia - 1015_SJ02_MP15_20_MG |
| Source Dataset Category | Metagenome |
| Source Dataset Use Policy | Open |
| Sequencing Center | DOE Joint Genome Institute (JGI) |
| Sequencing Status | Permanent Draft |
| Scaffold Components | |
|---|---|
| Scaffold Length (bps) | 5041 |
| Total Scaffold Genes | 9 (view) |
| Total Scaffold Genes with Ribosome Binding Sites (RBS) | 8 (88.89%) |
| Novel Protein Genes | 4 (view) |
| Novel Protein Genes with Ribosome Binding Sites (RBS) | 4 (100.00%) |
| Associated Families | 4 |
| Taxonomy | |
|---|---|
| All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium | (Source: UniRef50) |
| Source Dataset Ecosystem |
|---|
| Environmental → Terrestrial → Soil → Wetlands → Unclassified → Tropical Peatland → Tropical Peatland Microbial Communities From Different Locations |
| Source Dataset Sampling Location | ||||||||
|---|---|---|---|---|---|---|---|---|
| Location Name | Colombia: Department of Meta | |||||||
| Coordinates | Lat. (o) | 4.0627 | Long. (o) | -73.195 | Alt. (m) | Depth (m) | 0 | Location on Map |
| Zoom: | Powered by OpenStreetMap © | |||||||
| Family | Category | Number of Sequences | 3D Structure? |
|---|---|---|---|
| F008672 | Metagenome | 329 | Y |
| F010661 | Metagenome | 300 | Y |
| F011724 | Metagenome | 287 | Y |
| F062368 | Metagenome / Metatranscriptome | 130 | Y |
| Protein ID | Family | RBS | Sequence |
|---|---|---|---|
| Ga0187784_100228972 | F062368 | GGAGG | MAVSVSLTEQFIEGTVAGPYIKNAKLTVTGLTTGGNNSVPHGLNDGKGNAVTPITVSIEPSSNNNFYEYQAADSTNIYVGVGSGTGTSCNIYVEY |
| Ga0187784_100228973 | F011724 | GGAGG | MSYCTVDDVCTAFPRFVRNATNSIQDTQIEDWIDDRKARIRSALYARGIDPDAMALTPDQANFLRALNRDGAIADLADALQGNVSLQAGEESHASERRKSFERQVAEIKQGLYDKFFSQLARTVEIKPTLGGTAGGETDQSTAQDRGENKAFSKDQVY |
| Ga0187784_100228974 | F008672 | AGGA | MWTSYYNAGLSKQVVRQLLAVIKRDIQAALDFVSGAPGTYAPFAEYDLALLPVQQFPALLLTPDTVAVEEPANFTLHQSMRLTCVITVTHQDRNDLAELIQDYVRAVRAVLDSLWELTPGDFTLTTLPLPSPPFPQGALSPGLANGKLTKLFAERHTFEEIRRAAESGFAMAATMSILAEIEEN |
| Ga0187784_100228977 | F010661 | AGG | MTTGNEIATAADFRRLAEESAFEEARRVVLPVSGYAVMLRRPTKFYWALRRSGWPPELREKLDLVGVGVRTDLTAEETLLLVREDRQMLCEALVEPKPSLEPGATQFDPNWLPKEDADFILRYLRGQVLASGQDLESFPRGKPGLIEGSGCHGPAVREDTE |
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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |