NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0187784_10054350

Scaffold Ga0187784_10054350


Overview

Basic Information
Taxon OID3300018062 Open in IMG/M
Scaffold IDGa0187784_10054350 Open in IMG/M
Source Dataset NameTropical peat soil microbial communities from peatlands in Department of Meta, Colombia - 1015_SJ02_MP15_20_MG
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)3243
Total Scaffold Genes5 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)3 (60.00%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (66.67%)
Associated Families3

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Wetlands → Unclassified → Tropical Peatland → Tropical Peatland Microbial Communities From Different Locations

Source Dataset Sampling Location
Location NameColombia: Department of Meta
CoordinatesLat. (o)4.0627Long. (o)-73.195Alt. (m)Depth (m)0
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F008672Metagenome329Y
F010661Metagenome300Y
F098489Metagenome103Y

Sequences

Protein IDFamilyRBSSequence
Ga0187784_100543501F098489N/APDAMALTPDQANFLRALNRDGAIADLGDALEGNVSLQPGEASQASERRKSFERQIAEIKQGLYDKFFSLLAKTVEIEPTLGGTAGGETDRSTAQDRAENKAFSKDQIF
Ga0187784_100543502F008672GGAMWVSYYNAGLSKQVVRQLLAIINRDIQAALDFVSGVPGSYSPFVEYDLALLPVQQFPAILLTPDTVAFDEEADFSLHQTIGLSCVVALTHQDRNALAEITQDYVRAVRAVLDTLWESSPGDFLLTSLPLPSPPFPAGALSPGLASGKLTKIFADRHTFEEIRAGAKSGFVMTATMSVIVEIEET
Ga0187784_100543504F010661AGGMAKANHIATAAEFRQLAEAAAWTDPERVRLPKSGLAVILRRPTKFYWALRRSAWPGELREKLDLVGVGARPELTAEETLLLVREDRQMLNEAFVDPKPSVEPGTTQFDPTWLPKEDTEFILKYLRGQVLANGQDLERFPGSESGHAEASSGDGALVRENSERDAIPRGGPVAS
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