NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0187784_10936343

Scaffold Ga0187784_10936343


Overview

Basic Information
Taxon OID3300018062 Open in IMG/M
Scaffold IDGa0187784_10936343 Open in IMG/M
Source Dataset NameTropical peat soil microbial communities from peatlands in Department of Meta, Colombia - 1015_SJ02_MP15_20_MG
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)689
Total Scaffold Genes3 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)1 (33.33%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Associated Families2

Taxonomy
All Organisms → cellular organisms → Bacteria → Acidobacteria(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Wetlands → Unclassified → Tropical Peatland → Tropical Peatland Microbial Communities From Different Locations

Source Dataset Sampling Location
Location NameColombia: Department of Meta
CoordinatesLat. (o)4.0627Long. (o)-73.195Alt. (m)Depth (m)0
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F000822Metagenome / Metatranscriptome876Y
F013028Metagenome / Metatranscriptome275Y

Sequences

Protein IDFamilyRBSSequence
Ga0187784_109363432F000822AGGAGMKKLLFRYAAGILALAGAAYGQSTHVFRGEVSDSQCALNVHSLTRSHQEMLKSKSMGGTANTCSVYCIEHLGGYLVLSSGNNVYRLDRSDLVHGFEGRRVIITGVLDTKLNQIHVVKIDLEEK
Ga0187784_109363433F013028N/AGWDLLLKPGTQEYTMTVPNEPGAYEVVCTVICSEDHEGMHMKFTVVP

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