NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0187784_11373612

Scaffold Ga0187784_11373612


Overview

Basic Information
Taxon OID3300018062 Open in IMG/M
Scaffold IDGa0187784_11373612 Open in IMG/M
Source Dataset NameTropical peat soil microbial communities from peatlands in Department of Meta, Colombia - 1015_SJ02_MP15_20_MG
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)560
Total Scaffold Genes2 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)2 (100.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (100.00%)
Associated Families2

Taxonomy
All Organisms → cellular organisms → Bacteria → Acidobacteria(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Wetlands → Unclassified → Tropical Peatland → Tropical Peatland Microbial Communities From Different Locations

Source Dataset Sampling Location
Location NameColombia: Department of Meta
CoordinatesLat. (o)4.0627Long. (o)-73.195Alt. (m)Depth (m)0
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F000043Metagenome / Metatranscriptome3655Y
F058223Metagenome135Y

Sequences

Protein IDFamilyRBSSequence
Ga0187784_113736121F058223GGAGGMNDGAEMVVRILRGDEAALLQAKDEEYAYWQSRPPVERLLTMQELSFALFEERGNEAEIKHQFW
Ga0187784_113736122F000043AGGVRPGYRHGMIYQLGWTTLPGLRGLSVSEFRATPTATPDNEKGIALAFASDAEREAFLQQLERDFAPRRFTNAADAFDTVKAWVLEHALKSPGG

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