NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0184637_10013490

Scaffold Ga0184637_10013490


Overview

Basic Information
Taxon OID3300018063 Open in IMG/M
Scaffold IDGa0184637_10013490 Open in IMG/M
Source Dataset NameGroundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM3_127_b2
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)4912
Total Scaffold Genes8 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)6 (75.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (100.00%)
Associated Families2

Taxonomy
All Organisms → cellular organisms → Bacteria(Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Sediment → Unclassified → Unclassified → Groundwater Sediment → Soil And Sediment Microbial Communities From The East River, Co, Usa

Source Dataset Sampling Location
Location NameUSA: East River, Colorado
CoordinatesLat. (o)38.9195Long. (o)-106.9496Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F006926Metagenome / Metatranscriptome362Y
F008920Metagenome326Y

Sequences

Protein IDFamilyRBSSequence
Ga0184637_100134902F008920GAGGMIVSLQVRVIGRALTAAAVAWALLGPAAHAQPERGTARLDHAGVQGLLATLGYQPREARNESGPEYEIILRPPGGLAISTRVTLSRDGTLVWLVAWLKKVPPGRTISGNAILNMLTENDAIGPSHFSYHESRRWFFLNKPVPNQGLTADRLQGELQQLGATVARTEALWDFERWK
Ga0184637_100134904F006926GAGMSRRAFARRMGRALCAALLVAAALGPAGCAPLPPARQVTDINLIAGRWQGQIVFGRGSYQLFYLTINPDSTLIASWDGVTRWGKVTIEGGRARFNFYIWSGNLDYLEGSGDRVILLKEDFSHWDAIVRPLT
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