NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0180430_10405464

Scaffold Ga0180430_10405464


Overview

Basic Information
Taxon OID3300018065 Open in IMG/M
Scaffold IDGa0180430_10405464 Open in IMG/M
Source Dataset NameHypersaline lake sediment archaeal communities from the Salton Sea, California, USA - SS_1_S_2 metaG
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)931
Total Scaffold Genes2 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families2

Taxonomy
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Non-Marine Saline And Alkaline → Hypersaline → Sediment → Hypersaline Lake Sediment → Hypersaline Lake Sediment Archaeal Communities From The Salton Sea, California, Usa

Source Dataset Sampling Location
Location NameUSA: California
CoordinatesLat. (o)33.4166Long. (o)-115.9166Alt. (m)Depth (m)0
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F047990Metagenome / Metatranscriptome149N
F062723Metagenome130N

Sequences

Protein IDFamilyRBSSequence
Ga0180430_104054641F047990N/AMTATIVQSGDYTLEIDTGAPVRAFRLDDAVRGVLDGTTFVLDGLTDFADVTDGARNIQINRGRRDINDQFAAGTMSFILDDTAAGGVFNPFASDSPYYDPSNDEPGLAPMR
Ga0180430_104054642F062723N/AWSSTDELYKRMFALNPEIQRYLDQLDREQAVRDFNDAVEEFKEIARTNAEGSDEWEEANKKVNEELANVIETMGNVPQEIQTELFIQVQTGELDIAIAKANTLAEALRLAKVEAPAGQGGIPGFADLQASLGGSGFVGTSVPTAAGLQSSTLIRPGQGNVTYNVNVATLNPTAETGRVIADSLIKFNRASGSASFIGRQ
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