NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0180430_10789618

Scaffold Ga0180430_10789618


Overview

Basic Information
Taxon OID3300018065 Open in IMG/M
Scaffold IDGa0180430_10789618 Open in IMG/M
Source Dataset NameHypersaline lake sediment archaeal communities from the Salton Sea, California, USA - SS_1_S_2 metaG
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)658
Total Scaffold Genes2 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Associated Families2

Taxonomy
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Non-Marine Saline And Alkaline → Hypersaline → Sediment → Hypersaline Lake Sediment → Hypersaline Lake Sediment Archaeal Communities From The Salton Sea, California, Usa

Source Dataset Sampling Location
Location NameUSA: California
CoordinatesLat. (o)33.4166Long. (o)-115.9166Alt. (m)Depth (m)0
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F046083Metagenome152N
F047990Metagenome / Metatranscriptome149N

Sequences

Protein IDFamilyRBSSequence
Ga0180430_107896181F047990GGAGVSTAVVQSGDYTLEIDTGAPVRGFRLDDAVRGVLDGTTFVLDGVTDFADVTDGTRSIRIRRGRRDIADQFGAGTMTFLLDDTTAGGVFNPFASN
Ga0180430_107896182F046083N/AGLLKLAFEEQLMIKINTDDLDAAYASAIRVLGAFQQMQAISSGAAPGSTYVPPRDELGFLSAPPVSTTTITPVASITRAPSGAVQNVTVNVNTPTPTEEIGKVVVDSIRKYNRASGSAAIGVLRL
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