NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0184611_1000254

Scaffold Ga0184611_1000254


Overview

Basic Information
Taxon OID3300018067 Open in IMG/M
Scaffold IDGa0184611_1000254 Open in IMG/M
Source Dataset NameGroundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM3_5_coex
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)9499
Total Scaffold Genes10 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)1 (10.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Associated Families2

Taxonomy
All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes(Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Sediment → Unclassified → Unclassified → Groundwater Sediment → Soil And Sediment Microbial Communities From The East River, Co, Usa

Source Dataset Sampling Location
Location NameUSA: East River, Colorado
CoordinatesLat. (o)38.9195Long. (o)-106.9496Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F016074Metagenome250Y
F051999Metagenome143N

Sequences

Protein IDFamilyRBSSequence
Ga0184611_10002546F016074N/AMNATFETIRRELKKHNAEDNEAPPKLVVAGKNAFLDIEHKRKRDSQFIIGVKEFFPAEKFFIERMIDDLEMSSGKRPLTFLYDEREAIETVIKDFEDYYNTTLSHDLFQKIEPSTGEGEVQFYLIIVVMEIYYYES
Ga0184611_10002548F051999GAGMKTSTFIFLAIFFASVVSAQDQEFPRSKKTDSRYWLLGVGLSIQNMYDEGISYVRYKGTGIAPSIGLIKSTEKKYCQFLLQPTFNKLTTDRSNELRPMAVRTTRFVLDYQYLVKVKEWNEKLKLFAGGNASLLFDLKRAEQLDNSQLVYDYALSIGPAAKLDKTLRWNKRECVAVIGLSIPLISHIARPYYLNRIEFIDPKNDFLGDLFNNSSIVTVNKNFRITSGLSFTYPLFNKNELKLGYSWDFYKMTTINSVYAAEHLITISFLSNY
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