NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0184611_1162469

Scaffold Ga0184611_1162469


Overview

Basic Information
Taxon OID3300018067 Open in IMG/M
Scaffold IDGa0184611_1162469 Open in IMG/M
Source Dataset NameGroundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM3_5_coex
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)792
Total Scaffold Genes2 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Associated Families2

Taxonomy
All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Sediment → Unclassified → Unclassified → Groundwater Sediment → Soil And Sediment Microbial Communities From The East River, Co, Usa

Source Dataset Sampling Location
Location NameUSA: East River, Colorado
CoordinatesLat. (o)38.9195Long. (o)-106.9496Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F059136Metagenome134Y
F099519Metagenome / Metatranscriptome103Y

Sequences

Protein IDFamilyRBSSequence
Ga0184611_11624691F099519N/AVYSCVLTIGLPVLERARPTAAIAENLRPQLAPDDKVGLYRLEKWRFSLRYYLERPLSRLQEPAEVKEFLHKKGSYILLSDEDLARLRNDGVNLRAVSERPAVTGTTGRGLRRQKWGSLVVATSDDTPRTTNTAR
Ga0184611_11624692F059136AGGMVPGFMMTRRALLAVMLCVLVAAAVVAADRQWQSAIWRDTKIERPKVMFGVQSRDPNSNVPQAAVAREIRTFVIETSTHTLELRQDATVDTPHIDVLPGQTVRIAIEKKTVYVKDGLGKEHKLSLR
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