NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
x
This website uses cookies to improve user experience. By using NMPFamDB you consent to all cookies in accordance with our privacy policy. OK
Scaffold Ga0184624_10181826

Scaffold Ga0184624_10181826


Overview

Basic Information
Taxon OID3300018073 Open in IMG/M
Scaffold IDGa0184624_10181826 Open in IMG/M
Source Dataset NameGroundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM3_5_b1
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)934
Total Scaffold Genes3 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)2 (66.67%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Associated Families2

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Sediment → Unclassified → Unclassified → Groundwater Sediment → Soil And Sediment Microbial Communities From The East River, Co, Usa

Source Dataset Sampling Location
Location NameUSA: East River, Colorado
CoordinatesLat. (o)38.9195Long. (o)-106.9496Alt. (m)Depth (m)
Location on Map
Zoom:    Powered by OpenStreetMap ©

Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F001755Metagenome / Metatranscriptome641Y
F095079Metagenome / Metatranscriptome105N

Sequences

Protein IDFamilyRBSSequence
Ga0184624_101818261F001755N/ARKAGVRRQTAVTAMPLKMRPTGLGSGIDKDRADYTVFTGEWEVGRIYETRGGPDNLRWFWSMTVNGPMTRSDRVATLEEAKAQFQKSWDAWKKGAKLEEID
Ga0184624_101818262F095079GAGMTPEYLAKPLTPFPLPTTDGWMLRTIGDTGAYILALPKRRKRLAHWEQVRRLIMKEAGVATVTQQVHRALSKDDKLDVFAFESITSARRWRSAQKLEEE

 ⦗Top⦘



© Pavlopoulos Lab, Bioinformatics & Integrative Biology | B.S.R.C. "Alexander Fleming" | Privacy Notice
Make sure JavaScript is enabled in your browser settings to achieve functionality.