Scaffold Ga0184609

Basic Information
Taxon OID	3300018076 Open in IMG/M
Scaffold ID	Ga0184609_10003156 Open in IMG/M
Source Dataset Name	Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM1_60_coex
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Basic Information

Taxon OID

3300018076 Open in IMG/M

Scaffold ID

Ga0184609_10003156 Open in IMG/M

Source Dataset Name

Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM1_60_coex

Source Dataset Category

Metagenome

Source Dataset Use Policy

Open

Sequencing Center

DOE Joint Genome Institute (JGI)

Sequencing Status

Permanent Draft

Scaffold Components
Scaffold Length (bps)	5554
Total Scaffold Genes	7 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	3 (42.86%)
Novel Protein Genes	3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	2 (66.67%)
Associated Families	3

Scaffold Components

Scaffold Length (bps)

5554

Total Scaffold Genes

7 (view)

Total Scaffold Genes with Ribosome Binding Sites (RBS)

3 (42.86%)

Novel Protein Genes

3 (view)

Novel Protein Genes with Ribosome Binding Sites (RBS)

2 (66.67%)

Associated Families

Taxonomy
All Organisms → cellular organisms → Bacteria	(Source: IMG/M)

Taxonomy

All Organisms → cellular organisms → Bacteria

(Source: IMG/M)

Source Dataset Ecosystem
Environmental → Aquatic → Sediment → Unclassified → Unclassified → Groundwater Sediment → Soil And Sediment Microbial Communities From The East River, Co, Usa

Source Dataset Ecosystem

Environmental → Aquatic → Sediment → Unclassified → Unclassified → Groundwater Sediment → Soil And Sediment Microbial Communities From The East River, Co, Usa

Source Dataset Sampling Location
Location Name	USA: East River, Colorado
Coordinates	Lat. (^o)	38.9195	Long. (^o)	-106.9496	Alt. (m)	Depth (m)
Location on Map

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Source Dataset Sampling Location

Location Name

USA: East River, Colorado

Coordinates

Lat. (^o)

38.9195

Long. (^o)

-106.9496

Alt. (m)

Depth (m)

Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F062637	Metagenome / Metatranscriptome	130	N
F082446	Metagenome / Metatranscriptome	113	N
F083968	Metagenome / Metatranscriptome	112	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0184609_100031562	F083968	N/A	MRARGALTALLLLAGAERAAAQLCAGNSNFSLSHFHSAVDLDIDKLAHRYTAEFRYRYRHFFGGLEYGVKSWELTSLDGTSRAFGVTVGLTAQHPKSKFDLCPFFSYRSLAGPQEIGGSPWRFDEKSYSAGLSMGYLAARSKLWDCTPTATLTFATGYPKMTTAAGGNMATYQDFCCGSQSFTLLRLGVGLGFSDDLTLIPAVSWPLGDVGHTTYAVVVAFRLGKGI
Ga0184609_100031565	F082446	GAG	MVVWSLAWRAKHSGVPPWRTVATTVIATVVWFLLSGALPELGMEPKITIGDRGTRPGGGFTHSISNAFQRGQLETLQARAQQFGPSGAFAEFSCRDSVPDFRFEMTLEPAGEYNERLIDVGYTPRLDVGGADRCLSFGLSYLFDTTLAEIDHGPPVDYGYVNPRTGEKLGPYIRGPLRKPICRCDLRHSGREWVAWSQQAAEALR
Ga0184609_100031566	F062637	AGG	MKRTILLLTPLLFSAGCSVTSPSDPKEGVGPVVARYSLTAEDGNPPPCCASDSAGVHITVVGGALTFHGPAGYRDTVFTPAGPASGACVHEVPNGAFVNSRTYTVTLTDSTRYLLLPCDRGAYDLIVIRRLDHEGGSSTTDSIVVSSGTFSAKPDTIGLADSRNPVSFTASVTAPTVLVTGPTHQYRFDPGN

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Scaffold Ga0184609_10003156

Overview

Ecosystem & Geography

Associated Families

Sequences