NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0184609_10089113

Scaffold Ga0184609_10089113


Overview

Basic Information
Taxon OID3300018076 Open in IMG/M
Scaffold IDGa0184609_10089113 Open in IMG/M
Source Dataset NameGroundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM1_60_coex
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1373
Total Scaffold Genes3 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)3 (100.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (100.00%)
Associated Families2

Taxonomy
All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → unclassified Hyphomicrobiales → Hyphomicrobiales bacterium(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Sediment → Unclassified → Unclassified → Groundwater Sediment → Soil And Sediment Microbial Communities From The East River, Co, Usa

Source Dataset Sampling Location
Location NameUSA: East River, Colorado
CoordinatesLat. (o)38.9195Long. (o)-106.9496Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F007897Metagenome / Metatranscriptome343Y
F016071Metagenome / Metatranscriptome250Y

Sequences

Protein IDFamilyRBSSequence
Ga0184609_100891132F007897GAGGMPTTETCRYRGYDIVPMRQWSSWCVGVYTTRADLPLFSRSPLHTLATRREDAVAEAKQSIDRVLSRLDDWLA
Ga0184609_100891133F016071GGAGMSQRIAHEIAFGPSALDDLARAFDSAWLELCAWGVEANTEQQIKRIRTNLAQRIMEYATEGEQDVVHLKEFGLQGLPQVCAHGVRLPYSVKVDSLSRVAH

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