NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0180433_10086640

Scaffold Ga0180433_10086640


Overview

Basic Information
Taxon OID3300018080 Open in IMG/M
Scaffold IDGa0180433_10086640 Open in IMG/M
Source Dataset NameHypersaline lake sediment archaeal communities from the Salton Sea, California, USA - SS_1_D_1 metaG
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)2746
Total Scaffold Genes6 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)1 (16.67%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (33.33%)
Associated Families3

Taxonomy
All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → Weeksellaceae → Elizabethkingia(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Non-Marine Saline And Alkaline → Hypersaline → Sediment → Hypersaline Lake Sediment → Hypersaline Lake Sediment Archaeal Communities From The Salton Sea, California, Usa

Source Dataset Sampling Location
Location NameUSA: California
CoordinatesLat. (o)33.4166Long. (o)-115.9166Alt. (m)Depth (m)0
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F006015Metagenome383N
F012450Metagenome280N
F068775Metagenome124N

Sequences

Protein IDFamilyRBSSequence
Ga0180433_100866403F068775N/AMDKQELKSLVTAFGELITAAAKLDSDKDGKIELTEIFSFVQTLVMKVAAVYGPFPEAIKQFKDVKSAERKELIAAFADSFNLENNDAEEVIEEWLFVIDDIADAVVITKKYFAIK
Ga0180433_100866404F012450GAGMKTLIEKLPNFDTIIKSSGFAVFVMFAMMSAMAYTLWSQYNNMNERLTKLEREVIECYKDNMVHNQGIIERNTKVMEEVLNNLNIK
Ga0180433_100866405F006015N/AMKTLFTFRQALELVMFIIIVLFSKALKSQVPDSIYYVPFTFTTEETVGTSDSQAFIVYESKILPNTGVMTFEAIDKVMDSTQVSEYAFNLIYRNENLNWLDAARLMKREKLARLYAPVNDIIRSMEGYGFFVKTRLKFGDGFEGRWIARINGGDIIWLEVDRFMNVTETTMQGEPIENGRTGRLLIYTENRFKVQTLFNDVIDFRDYWNKELDSDFFVIESEGNKVIMRKID
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